11.3 Exercise 1 - scatter plots

Time for our first exercise!

Starting from the same object geneexp:

1. Create a scatter plot of WT2 (x-axis) versus KO2 (y-axis).

correction

ggplot(data=geneexp, mapping=aes(x=WT2, y=KO2)) + 
  geom_point()

2. Change the point color (blue) and size (2).

correction

ggplot(data=geneexp, mapping=aes(x=WT1, y=KO2)) + 
  geom_point(color="blue", size=2)

3. Change the point shape (“square cross”)

correction

ggplot(data=geneexp, mapping=aes(x=WT1, y=KO2)) + 
  geom_point(color="blue", size=2, shape="square cross")

4. Add a title (of your choice).

correction

ggplot(data=geneexp, mapping=aes(x=WT1, y=KO2)) + 
  geom_point(color="blue", size=2, shape="square cross") +
  ggtitle(label="WT1 vs KO2")

5. Add a subtitle (wait: that’s new! Check ggtitle help page and/or search the internet for “ggtitle subtitle” and see if you can find!)

correction

ggplot(data=geneexp, mapping=aes(x=WT1, y=KO2)) + 
  geom_point(color="blue", size=2, shape="square cross") +
  ggtitle(label="WT1 vs KO2", subtitle="nice blue squares")

6. Save your plot as a JPEG file, in the workshop folder, with dimensions 600X600 pixels.

correction

From the interface:

Bottom-right panel -> Plots tab -> Export -> …

From the console:

# first, save in an object
mybluescatterplot <- ggplot(data=geneexp, mapping=aes(x=WT1, y=KO2)) + 
  geom_point(color="blue", size=2, shape="square cross") +
  ggtitle(label="WT1 vs KO2", subtitle="nice blue squares")

# then save with ggsave
ggsave(filename="WT1_versus_KO2.jpg", plot=mybluescatterplot, 
       device="jpeg", 
       units="px", width=600, height=600)